Source code for pygimli.testing

# coding=utf-8
Testing utilities

In Python you can call `pygimli.test()` to run all docstring

Writing tests for pygimli

Please check:

import sys
from os.path import join, realpath

import matplotlib.pyplot as plt
import numpy as np

import pygimli as pg

import warnings

[docs]def test(target=None, show=False, onlydoctests=False, coverage=False, htmlreport=False, abort=False, verbose=True): """Run docstring examples and additional tests. Examples -------- >>> import pygimli as pg >>> # You can test everything with pg.test() or test a single function: >>> pg.test("pg.utils.boxprint", verbose=False) >>> # The target argument can also be the function directly >>> from pygimli.utils import boxprint >>> pg.test(boxprint, verbose=False) Parameters ---------- target : function or string, optional Function or method to test. By default everything is tested. show : boolean, optional Show matplotlib windows during test run. They will be closed automatically. onlydoctests : boolean, optional Run test files in ../tests as well. coverage : boolean, optional Create a coverage report. Requires the pytest-cov plugin. htmlreport : str, optional Filename for HTML report such as Requires pytest-html plugin. abort : boolean, optional Return correct exit code, e.g. abort documentation build when a test fails. """ # Remove figure warnings plt.rcParams["figure.max_open_warning"] = 1000 warnings.filterwarnings("ignore", category=UserWarning, message='Matplotlib is currently using agg, which is a' ' non-GUI backend, so cannot show the figure.') printopt = np.get_printoptions() if verbose: pg.boxprint("Testing pygimli %s" % pg.__version__, sym="+", width=90) # Numpy compatibility (array string representation has changed) if np.__version__[:4] == "1.14": pg.warn("Some doctests will fail due to old numpy version.", "Consider upgrading to numpy >= 1.15") if target: if isinstance(target, str): # If target is a string, such as "pg.solver.solve" # the code below will overwrite target with the corresponding # imported function, so that doctest works. target = target.replace("pg.", "pygimli.") import importlib mod_name, func_name = target.rsplit('.', 1) mod = importlib.import_module(mod_name) target = getattr(mod, func_name) if show: # Keep figure openend if single function is tested plt.ioff() import doctest doctest.run_docstring_examples(target, globals(), verbose=verbose, optionflags=doctest.ELLIPSIS, name=target.__name__) return try: import pytest except ImportError: raise ImportError("pytest is required to run test suite. " "Try 'sudo pip install pytest'.") old_backend = plt.get_backend() if not show: plt.switch_backend("Agg") else: plt.ion() cwd = join(realpath(__path__[0]), '..') excluded = [ "gui", "physics/traveltime/", "physics/em/" ] if onlydoctests: excluded.append("testing") cmd = ([ "-v", "-rsxX", "--color", "yes", "--doctest-modules", "--durations", "5", cwd ]) for directory in excluded: cmd.extend(["--ignore", join(cwd, directory)]) if coverage: pc = pg.optImport("pytest_cov", "create a code coverage report") if pc: cmd.extend(["--cov", "pygimli"]) cmd.extend(["--cov-report", "term"]) if htmlreport: ph = pg.optImport("pytest_html", "create a html report") if ph: cmd.extend(["--html", htmlreport]) plt.close("all") exitcode = pytest.main(cmd) if abort: print("Exiting with exitcode", exitcode) sys.exit(exitcode) plt.switch_backend(old_backend) np.set_printoptions(**printopt)