This tutorial shows how an built-in forward operator is used for an Occam type (smoothness-constrained) inversion with fixed regularization (most natural). A direct current (DC) one-dimensional (1D) VES (vertical electric sounding) modelling operator is used to generate data, add noise and inversion.

We import numpy numerics, mpl plotting, pygimli and the 1D plotting function

import numpy as np
import matplotlib.pyplot as plt

import pygimli as pg
from pygimli.mplviewer import drawModel1D
synres = [100., 500., 20., 800.]  # synthetic resistivity
synthk = [4, 6, 10]  # synthetic thickness (lay layer is infinite)
ab2 = np.logspace(-1, 2, 25)  # 0.1 to 100 in 25 steps (8 points per decade)
fBlock = pg.DC1dModelling(len(synres), ab2, ab2/3)
rhoa = fBlock(synthk+synres)
# The data are noisified using a
errPerc = 3.  # relative error of 3 percent
rhoa = rhoa * (pg.randn(len(rhoa)) * errPerc / 100. + 1.)

%% the forward operator can be called by f.response(model) or simply f(model)

thk = np.logspace(-0.5, 0.5, 30)
f = pg.DC1dRhoModelling(thk, ab2, ab2/3)

%% create some transformations used for inversion

transRho = pg.RTransLogLU(1, 1000)  # lower and upper bound
transRhoa = pg.RTransLog()  # log transformation also for data

set up inversion

inv = pg.RInversion(rhoa, f, transRhoa, transRho, False)  # data vector, f, ...
# The transformations can also be omitted and set individually by

the error model is set to the above used noise level

inv.setRelativeError(errPerc / 100.0)

optionally change default model by changing a layer resistivity

model = pg.RVector(len(thk)+1, np.median(rhoa))  # uniform values
inv.setModel(model)  #

set pretty large regularization strength and run inversion

print("inversion with lam=200")
res100 = inv.run()  # result is a pg.RVector, but compatible to numpy array
# We now decrease the regularization (smoothness) and start (from old result)
print("inversion with lam=20")
res10 = inv.run()  # result is a pg.RVector, but compatible to numpy array
# We now optimize lambda such that data are fitted within noise (chi^2=1)
print("chi^2=1 optimized inversion")
resChi = inv.runChi1()  # ends up in a lambda of about 3
print("optimized lambda value:", inv.getLambda())


inversion with lam=200
inversion with lam=20
chi^2=1 optimized inversion
optimized lambda value: 5.904963307147652

show everything

fig, ax = plt.subplots(ncols=2, figsize=(8, 6))  # two-column figure
# plot model (inverted and synthetic)
drawModel1D(ax[0], synthk, synres, color='b', label='synthetic',
drawModel1D(ax[0], thk, res100, color='g', label=r'$\lambda$=100')
drawModel1D(ax[0], thk, res10, color='c', label=r'$\lambda$=10')
drawModel1D(ax[0], thk, resChi, color='r', label=r'$\chi$=1')
ax[0].grid(True, which='both')
# plot sounding curve data and model response
ax[1].loglog(rhoa, ab2, 'rx-', label='measured')
ax[1].loglog(inv.response(), ab2, 'b-', label='fitted')
ax[1].set_ylim((max(ab2), min(ab2)))
ax[1].grid(True, which='both')
ax[1].set_xlabel(r'$\rho_a$ [$\Omega$m]')
ax[1].set_ylabel('AB/2 [m]')



There is no line property "plotfunction"

Total running time of the script: ( 1 minutes 2.786 seconds)

Generated by Sphinx-Gallery

News (Aug 2017):
pyGIMLi Paper out now! Download PDF here.

© 2017 - GIMLi Development Team
Created using Bootstrap and Sphinx. Last updated on Aug 15, 2017.