#include <modellingbase.h>

Inherited by GIMLI::DC1dModelling, GIMLI::DCMultiElectrodeModelling, GIMLI::FDEM1dModelling, GIMLI::GravimetryModelling, GIMLI::HarmonicModelling, GIMLI::LinearModelling, GIMLI::MRSModelling, GIMLI::MT1dModelling, GIMLI::PolynomialModelling, and GIMLI::TravelTimeDijkstraModelling.

Public Member Functions
	ModellingBase (bool verbose=false)

	ModellingBase (DataContainer &dataContainer, bool verbose=false)

	ModellingBase (const Mesh &mesh, bool verbose=false)

	ModellingBase (const Mesh &mesh, DataContainer &dataContainer, bool verbose=false)

void	setVerbose (bool verbose)

bool	verbose () const

virtual RVector	response (const RVector &model)

virtual RVector	response_mt (const RVector &model, Index i=0) const

RVector	operator() (const RVector &model)

void	setData (DataContainer &data)

DataContainer &	data () const

virtual RVector	createDefaultStartModel ()

virtual RVector	startModel ()

virtual void	setStartModel (const RVector &startModel)

void	setMesh (const Mesh &mesh, bool ignoreRegionManager=false)

Mesh *	mesh ()

void	createRefinedForwardMesh (bool refine=true, bool pRefine=false)

void	deleteMesh ()

virtual void	setJacobian (MatrixBase *J)

virtual void	createJacobian (const RVector &model)

virtual void	createJacobian (const RVector &model, const RVector &resp)

virtual void	createJacobian_mt (const RVector &model, const RVector &resp)

virtual void	initJacobian ()

MatrixBase *	jacobian ()

MatrixBase *	jacobian () const

virtual RMatrix &	jacobianRef () const

virtual RMatrix &	jacobianRef ()

virtual void	clearJacobian ()

virtual void	setConstraints (MatrixBase *C)

virtual void	clearConstraints ()

virtual void	initConstraints ()

virtual void	createConstraints ()

virtual MatrixBase *	constraints ()

virtual MatrixBase *	constraints () const

virtual RSparseMapMatrix &	constraintsRef () const

virtual RSparseMapMatrix &	constraintsRef ()

const RMatrix &	solution () const

void	mapModel (const RVector &model, double background=0)

RVector	createMappedModel (const RVector &model, double background=-9e99) const

void	setRegionManager (RegionManager *reg)

const RegionManager &	regionManager () const

RegionManager &	regionManager ()

RegionManager &	regionManagerRef ()

bool	verbose ()

Region *	region (int marker)

RVector	createStartModel ()

RVector	createStartVector ()

void	initRegionManager ()

void	setThreadCount (Index nThreads)

Index	threadCount ()

void	setMultiThreadJacobian (Index nThreads)

Index	multiThreadJacobian () const

Protected Member Functions
virtual void	init_ ()

virtual void	deleteMeshDependency_ ()

virtual void	updateMeshDependency_ ()

virtual void	updateDataDependency_ ()

void	setMesh_ (const Mesh &mesh, bool update=true)

Protected Attributes
Mesh *	mesh_

DataContainer *	dataContainer_

MatrixBase *	jacobian_

bool	ownJacobian_

MatrixBase *	constraints_

bool	ownConstraints_

RMatrix	solutions_

RVector	startModel_

bool	verbose_

bool	regionManagerInUse_

bool	ownRegionManager_

Index	nThreads_

Index	nThreadsJacobian_

Detailed Description

General modelling interface class.

Member Function Documentation

◆ clearJacobian()

virtual void GIMLI::ModellingBase::clearJacobian ( )

inlinevirtual

Clear Jacobian matrix.

◆ createDefaultStartModel()

virtual RVector GIMLI::ModellingBase::createDefaultStartModel ( )

inlinevirtual

Interface to define custom start model generators.

Reimplemented in GIMLI::DC1dModelling, GIMLI::DC1dRhoModelling, GIMLI::DCMultiElectrodeModelling, GIMLI::GravimetryModelling, GIMLI::LinearModelling, GIMLI::TravelTimeDijkstraModelling, and GIMLI::TTModellingWithOffset.

Referenced by startModel().

◆ createJacobian() [1/2]

void GIMLI::ModellingBase::createJacobian ( const RVector & model )

virtual

Create and fill the Jacobian matrix with a given model vector.

Reimplemented in GIMLI::DCMultiElectrodeModelling, GIMLI::GravimetryModelling, GIMLI::HarmonicModelling, GIMLI::LinearModelling, GIMLI::MRS1dBlockModelling, GIMLI::MRSModelling, GIMLI::TravelTimeDijkstraModelling, and GIMLI::TTModellingWithOffset.

References createJacobian(), createJacobian_mt(), initJacobian(), GIMLI::Matrix< ValueType >::resize(), response_mt(), and GIMLI::Matrix< ValueType >::rows().

Referenced by createJacobian(), createJacobian(), and GIMLI::MRS1dBlockModelling::createJacobian().

◆ createJacobian() [2/2]

void GIMLI::ModellingBase::createJacobian	(	const RVector &	model,
		const RVector &	resp )

virtual

Create and fill the Jacobian matrix with a given model vector and a prior calculated response for this model. The Jacobian matrix need to by initialized and resized. If unsure take createJacobian(const RVector & model).

References createJacobian(), GIMLI::Stopwatch::duration(), initJacobian(), GIMLI::Matrix< ValueType >::resize(), GIMLI::Matrix< ValueType >::rows(), and GIMLI::Matrix< ValueType >::setCol().

◆ createJacobian_mt()

void GIMLI::ModellingBase::createJacobian_mt	(	const RVector &	model,
		const RVector &	resp )

virtual

Create and fill the Jacobian matrix with a given model vector. Multi-threaded version. Will be called if setMultiThreadJacobian has been set > 1. For thread safe reasons response_mt, a read only variant of the response method need to be implemented.

References createJacobian_mt(), GIMLI::Stopwatch::duration(), initJacobian(), GIMLI::Matrix< ValueType >::resize(), and GIMLI::Matrix< ValueType >::rows().

Referenced by createJacobian(), and createJacobian_mt().

◆ createMappedModel()

RVector GIMLI::ModellingBase::createMappedModel	(	const RVector &	model,
		double	background = -9e99 ) const

Read only extrapolation of model values given per cell marker to values given per cell. Exterior values will be set to background or prolongated for background != -9e99.

References createMappedModel(), and GIMLI::unique().

Referenced by createMappedModel(), GIMLI::DCMultiElectrodeModelling::mapERTModel(), and GIMLI::TravelTimeDijkstraModelling::response().

◆ createStartVector()

RVector GIMLI::ModellingBase::createStartVector ( )

DEPRECATED use createStartModel

References createStartVector().

Referenced by createStartVector().

◆ data()

DataContainer & GIMLI::ModellingBase::data ( ) const

Return the associated data container.

References data().

Referenced by data(), GIMLI::DC1dModelling::DC1dModelling(), and setData().

◆ deleteMesh()

void GIMLI::ModellingBase::deleteMesh ( )

Delete the actual mesh.

References deleteMesh().

Referenced by deleteMesh().

◆ init_()

void GIMLI::ModellingBase::init_ ( )

protectedvirtual

Reimplemented in GIMLI::DC1dModelling.

◆ initJacobian()

void GIMLI::ModellingBase::initJacobian ( )

virtual

Here you should initialize your Jacobian matrix. Default is RMatrix()

Reimplemented in GIMLI::GravimetryModelling, GIMLI::TravelTimeDijkstraModelling, and GIMLI::TTModellingWithOffset.

References initJacobian().

Referenced by createJacobian(), createJacobian(), createJacobian_mt(), and initJacobian().

◆ jacobian() [1/2]

MatrixBase * GIMLI::ModellingBase::jacobian ( )

inline

Return the pointer to the Jacobian matrix associated with this forward operator.

Referenced by GIMLI::HarmonicModelling::createJacobian(), GIMLI::MRSModelling::createJacobian(), and GIMLI::TTModellingWithOffset::createJacobian().

◆ jacobian() [2/2]

MatrixBase * GIMLI::ModellingBase::jacobian ( ) const

inline

Return the pointer to the Jacobian matrix associated with this forward operator.

◆ jacobianRef()

virtual RMatrix & GIMLI::ModellingBase::jacobianRef ( ) const

inlinevirtual

Return the Jacobian Matrix (read only) associated with this forward operator. Throws an exception if the jacobian is not initialized. Cannot yet be overloaded by pyplusplus (return virtual reference)(Warning 1049).

◆ multiThreadJacobian()

Index GIMLI::ModellingBase::multiThreadJacobian ( ) const

inline

Return number of threads used for Jacobian generation.

◆ region()

Region * GIMLI::ModellingBase::region ( int marker )

Syntactic sugar for this->regionManager().region(marker).

References region().

Referenced by region().

◆ response()

virtual RVector GIMLI::ModellingBase::response ( const RVector & model )

inlinevirtual

Reimplemented in GIMLI::DC1dModelling, GIMLI::DC1dModellingC, GIMLI::DC1dRhoModelling, GIMLI::DCMultiElectrodeModelling, GIMLI::GravimetryModelling, GIMLI::HarmonicModelling, GIMLI::LinearModelling, GIMLI::MRS1dBlockModelling, GIMLI::MRSModelling, GIMLI::MT1dModelling, GIMLI::MT1dRhoModelling, GIMLI::TravelTimeDijkstraModelling, and GIMLI::TTModellingWithOffset.

◆ response_mt()

virtual RVector GIMLI::ModellingBase::response_mt	(	const RVector &	model,
		Index	i = 0 ) const

inlinevirtual

Read only response function for multi threading purposes. Index i is use thread counter.

Referenced by createJacobian().

◆ setConstraints()

void GIMLI::ModellingBase::setConstraints ( MatrixBase * C )

virtual

Set and get constraint matrix

Clear Constraints matrix

References setConstraints().

Referenced by setConstraints().

◆ setData()

void GIMLI::ModellingBase::setData ( DataContainer & data )

Change the associated data container

References data(), and setData().

Referenced by GIMLI::DC1dModelling::DC1dModelling(), and setData().

◆ setJacobian()

void GIMLI::ModellingBase::setJacobian ( MatrixBase * J )

virtual

Set external Jacobian matrix

References setJacobian().

Referenced by setJacobian().

◆ setMesh()

void GIMLI::ModellingBase::setMesh	(	const Mesh &	mesh,
		bool	ignoreRegionManager = false )

Set new mesh to the forward operator, optionally hold region parameter for the new mesh (i.e. for roll a long)

References GIMLI::Stopwatch::duration(), and setMesh().

Referenced by GIMLI::DCSRMultiElectrodeModelling::checkPrimpotentials_(), GIMLI::DC1dModelling::DC1dModelling(), GIMLI::DC1dModelling::DC1dModelling(), GIMLI::DC1dModelling::DC1dModelling(), GIMLI::DC1dModellingC::DC1dModellingC(), GIMLI::DC1dModellingC::DC1dModellingC(), GIMLI::FDEM1dRhoModelling::FDEM1dRhoModelling(), GIMLI::MRS1dBlockModelling::MRS1dBlockModelling(), and setMesh().

◆ setMultiThreadJacobian()

void GIMLI::ModellingBase::setMultiThreadJacobian ( Index nThreads )

Set number of threads used for brute force Jacobian generation. 1 is default. If nThreads is greater than 1 you need to implement response_mt with a read only response function. Maybe its worth set the single setThreadCount to 1 than, that you don't find yourself in a threading overkill.

References setMultiThreadJacobian().

Referenced by setMultiThreadJacobian().

◆ setThreadCount()

void GIMLI::ModellingBase::setThreadCount ( Index nThreads )

Set the maximum number of allowed threads for MT calculation. Have to be greater than 0. Will also set ENV(OPENBLAS_NUM_THREADS) .. if used.

References setThreadCount(), and GIMLI::setThreadCount().

Referenced by setThreadCount().

◆ setVerbose()

void GIMLI::ModellingBase::setVerbose ( bool verbose )

Set verbose state.

References setVerbose(), and verbose().

Referenced by setVerbose().

◆ startModel()

RVector GIMLI::ModellingBase::startModel ( )

virtual

Return the start model. If there is no model defined createDefaultStartModel is called which can be overloaded by child classes. !

Reimplemented in GIMLI::HarmonicModelling, and GIMLI::PolynomialModelling.

References createDefaultStartModel(), and startModel().

Referenced by startModel().

◆ threadCount()

Index GIMLI::ModellingBase::threadCount ( )

Return the maximum number of allowed threads for MT calculation based on local setting. GIMLI_NUM_THREADS will be used first. Give some verbose output.

References GIMLI::numberOfCPU(), threadCount(), and verbose().

Referenced by GIMLI::TravelTimeDijkstraModelling::response(), and threadCount().

◆ updateMeshDependency_()

virtual void GIMLI::ModellingBase::updateMeshDependency_ ( )

inlineprotectedvirtual

Reimplemented in GIMLI::TravelTimeDijkstraModelling.

◆ verbose()

bool GIMLI::ModellingBase::verbose ( ) const

inline

Get verbose state.

Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

Member Function Documentation

◆ clearJacobian()

◆ createDefaultStartModel()

◆ createJacobian() [1/2]

◆ createJacobian() [2/2]

◆ createJacobian_mt()

◆ createMappedModel()

◆ createStartVector()

◆ data()

◆ deleteMesh()

◆ init_()

◆ initJacobian()

◆ jacobian() [1/2]

◆ jacobian() [2/2]

◆ jacobianRef()

◆ multiThreadJacobian()

◆ region()

◆ response()

◆ response_mt()

◆ setConstraints()

◆ setData()

◆ setJacobian()

◆ setMesh()

◆ setMultiThreadJacobian()

◆ setThreadCount()

◆ setVerbose()

◆ startModel()

◆ threadCount()

◆ updateMeshDependency_()

◆ verbose()