# Crosshole traveltime tomography¶

Seismic and ground penetrating radar (GPR) methods are frequently applied to image the shallow subsurface. While novel developments focus on inverting the full waveform, ray-based approximations are still widely used in practice and offer a computationally efficient alternative. Here we demonstrate the modelling of traveltimes and their inversion for the underlying slowness distribution for a crosshole scenario.

We start by importing the necessary packages.

import matplotlib as mpl
import matplotlib.pyplot as plt
import numpy as np

import pygimli as pg
import pygimli.meshtools as mt
from pygimli.physics.traveltime import TravelTimeManager

pg.utils.units.quants['vel']['cMap'] = 'inferno_r'


Next, we build the crosshole acquisition geometry with two shallow boreholes.

# Acquisition parameters
bh_spacing = 20.0
bh_length = 25.0
sensor_spacing = 2.5

world = mt.createRectangle(start=[0, -(bh_length + 3)], end=[bh_spacing, 0.0],
marker=0)

depth = -np.arange(sensor_spacing, bh_length + sensor_spacing, sensor_spacing)

sensors = np.zeros((len(depth) * 2, 2))  # two boreholes
sensors[len(depth):, 0] = bh_spacing  # x
sensors[:, 1] = np.hstack([depth] * 2)  # y


Traveltime calculations work on unstructured meshes and structured grids. We demonstrate this here by simulating the synthetic data on an unstructured mesh and inverting it on a simple structured grid.

# Create forward model and mesh
c0 = mt.createCircle(pos=(7.0, -10.0), radius=3, segments=25, marker=1)
c1 = mt.createCircle(pos=(12.0, -18.0), radius=4, segments=25, marker=2)
geom = world + c0 + c1
for sen in sensors:
geom.createNode(sen)

mesh_fwd = mt.createMesh(geom, quality=34, area=0.25)
model = np.array([2000., 2300, 1700])[mesh_fwd.cellMarkers()]
pg.show(mesh_fwd, model,
label=pg.unit('vel'), cMap=pg.cmap('vel'), nLevs=3, logScale=False) Out:

(<matplotlib.axes._subplots.AxesSubplot object at 0x7f291e563f98>, <matplotlib.colorbar.Colorbar object at 0x7f291e7bf5c0>)


Next, we create an empty DataContainer and fill it with sensor positions and all possible shot-recevier pairs for the two-borehole scenario using the product function in the itertools module (Python standard library).

from itertools import product
numbers = np.arange(len(depth))
rays = list(product(numbers, numbers + len(numbers)))

# Empty container
scheme = pg.DataContainer()

for sen in sensors:
scheme.createSensor(sen)

rays = np.array(rays)
scheme.resize(len(rays))
scheme["s"] = rays[:, 0]
scheme["g"] = rays[:, 1]
scheme["valid"] = np.ones(len(rays))
scheme.registerSensorIndex("s")
scheme.registerSensorIndex("g")


The forward simulation is performed with a few lines of code. We initialize an instance of the Refraction manager and call its simulate function with the mesh, the scheme and the slowness model (1 / velocity). We also add 0.1% relative and 10 microseconds of absolute noise.

Secondary nodes allow for more accurate forward simulations. Check out the paper by Giroux & Larouche (2013) to learn more about it.

tt = TravelTimeManager()
data = tt.simulate(mesh=mesh_fwd, scheme=scheme, slowness=1./model,
secNodes=4, noiseLevel=0.001, noiseAbs=1e-5, seed=1337)


Now we create the unstructured inversion mesh

refinement = 0.25
x = np.arange(0, bh_spacing + refinement, sensor_spacing * refinement)
y = -np.arange(0.0, bh_length + 3, sensor_spacing * refinement)
mesh = pg.meshtools.createMesh2D(x, y)

ax, _ = pg.show(mesh, hold=True)
ax.plot(sensors[:, 0], sensors[:, 1], "ro") Out:

[<matplotlib.lines.Line2D object at 0x7f291e6f4780>]


Note. Setting setRecalcJacobian(False) to simulate linear inversion here.

tt.inv.inv.setRecalcJacobian(True)

invmodel = tt.invert(data, mesh=mesh, secNodes=3, lam=1000, zWeight=1.0,
print("chi^2 = %.2f" % tt.inv.chi2())  # Look at the data fit
# np.testing.assert_approx_equal(tt.inv.chi2(), 0.999038, significant=5)


Out:

fop: <pygimli.physics.traveltime.TravelTimeManager.TravelTimeDijkstraModelling object at 0x7f291e577d18>
Data transformation: <pygimli.core._pygimli_.RTrans object at 0x7f291e577228>
Model transformation: <pygimli.core._pygimli_.RTransLog object at 0x7f291e577458>
min/max (data): 0.0096/0.015
min/max (error): 0.17%/0.2%
min/max (start model): 5.0e-04/5.0e-04
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
inv.iter 2 ... chi² = 3.64 (dPhi = 78.71%) lam: 1000.0
--------------------------------------------------------------------------------
inv.iter 3 ... chi² = 2.44 (dPhi = 27.81%) lam: 1000.0
--------------------------------------------------------------------------------
inv.iter 4 ... chi² = 1.36 (dPhi = 20.11%) lam: 1000.0
--------------------------------------------------------------------------------
inv.iter 5 ... chi² = 1.26 (dPhi = 6.82%) lam: 1000.0
--------------------------------------------------------------------------------
inv.iter 6 ... chi² = 1.19 (dPhi = 3.09%) lam: 1000.0
--------------------------------------------------------------------------------
inv.iter 7 ... chi² = 1.09 (dPhi = 2.26%) lam: 1000.0
--------------------------------------------------------------------------------
inv.iter 8 ... chi² = 1.06 (dPhi = 1.13%) lam: 1000.0
################################################################################
#                 Abort criteria reached: dPhi = 1.13 (< 2.0%)                 #
################################################################################
chi^2 = 1.06


Finally, we visualize the true model and the inversion result next to each other.

fig, (ax1, ax2) = plt.subplots(1, 2, figsize=(8, 7), sharex=True, sharey=True)
ax1.set_title("True model")
ax2.set_title("Inversion result")

pg.show(mesh_fwd, model, ax=ax1, showMesh=True,
label=pg.unit('vel'), cMap=pg.cmap('vel'), nLevs=3)

for ax in (ax1, ax2):
ax.plot(sensors[:, 0], sensors[:, 1], "wo")

tt.showResult(ax=ax2, logScale=False, nLevs=3)
tt.drawRayPaths(ax=ax2, color="0.8", alpha=0.3)
fig.tight_layout()
fig.savefig('test.pdf') Note how the rays are attracted by the high velocity anomaly while circumventing the low velocity region. This is also reflected in the coverage, which can be visualized as follows:

fig, ax = plt.subplots()
tt.showCoverage(ax=ax, cMap="Greens")
tt.drawRayPaths(ax=ax, color="k", alpha=0.3)
ax.plot(sensors[:, 0], sensors[:, 1], "ko") Out:

[<matplotlib.lines.Line2D object at 0x7f291e327dd8>]


White regions indicate the model null space, i.e. cells that are not traversed by any ray.

Total running time of the script: ( 0 minutes 36.576 seconds)

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